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Pathway Enrichment Analysis

 
 
The pathway enrichment analysis module uses data from RNA or ChIP sequencing and identifies functional pathways that are up- or downregulated. The analysis helps to visualize the influence of certain treatments or conditions on the general functional mechanisms in target organism. The pathway analysis module is restricted to the common eukaryotic model organisms (human, mouse, rat etc.) for which pathway information is available.

 

 
Figure 1: Network graph for upregulated pathways. Three gene-ontology domains (cellular component, biological process and molecular function) are each displayed in a network graph as a preview for the most significant ontology terms
 
Figure 2: Detail of a Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis result.
 

 

Standard modules where the pathway enrichment analysis module can be used: